Positive matrices and nonnegative matrices
A nonnegative matrix is a square matrix with nonnegative entries: $A \in M_n$, $a_{ij} \ge 0, \forall i, j$, denote by $A \ge 0$. A positive matrix is a square matrix with positive entries: $A \in M_n$, $a_{ij} > 0, \forall i, j$, denote by $A > 0$.
Comparison of matrices: given $A, B \in M_n(\mathbb{R})$, $A \ge B$ iff $A - B \ge 0$; $A > B$ iff $A - B > 0$;
A nonnegative matrix $A \in M_n, n \ge 2$ need not be diagonalizable even if all the entries of $A$ are positive.
Theorem (8.1.26): Given a nonnegative matrix $A \in M_n, A \ge 0$, for all positive vector $x \in \mathbb{C}^n, x > 0$, the spectral radius $\rho(A)$ is within the intersection of the ranges of entries of $A x / x$ and $\mathrm{diag}(x)^{-1} A x$.
Corollary: If a nonnegative matrix $A \in M_n$ has a positive eigenvector, then:
A matrix is (row) stochastic if it is nonnegative and its row sums are one: $A \mathbf{1} = \mathbf{1}$. A matrix is column stochastic if it is nonnegative and its column sums are one: $\mathbf{1}^T A = \mathbf{1}^T$. A matrix is doubly stochastic if it is both row and column stochastic.
Stochastic matrices can express transition probabilities of Markov chains. Examples of doubly stochastic matrices include orthostochastic matrices $A = U \circ U^∗, U \in \mathcal{U}$ and permutation matrices.
Stochastic matrices form a compact convex set in $M_n$. Doubly stochastic matrices also form a compact convex set in $M_n$, where the extreme points are the $n!$ permutation matrices.
Theorem: If $A$ is column stochastic, then TFAE (the followings are equivalent):
Birkhoff's theorem (8.7.1): A matrix is doubly stochastic iff it is a convex combination of finitely many (at most $N = n^2 - 2n + 2$) permutation matrices.
Theorem (von Neumann): If $A, B \in M_n$, then $\mathrm{Re}(\mathrm{tr}(A B)) \le \sum_{i=n}^n \sigma_i(A) \sigma_i(B)$.